Thursday, August 14, 2014

Two ideas for HLA typing

1. Mapping to Genomic DNA
2. using exact match instead of soft clips
3. change trimming methods
4. add QC step
5. homozygous parameter in exon

Todo:

1. try another trimming methods
2. try homozygous parameter each exon
3. investigate the reads that can map to both alleles

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