Results folder is here:
Y:\NGS_analyses\automated\RNA-Seq\Mapping\000775_JrWen_BC13_Details


Running folder is here, where you can find the .config file + MetaData:
Y:\Groups\core\hiseq_raw_data\140529_D00361_0050_AH9A9MADXX_5_29_14_JiKa_RRBS_JrWen_BC13

Command:
/share/apps/perl/perl-5.18.1/bin/perl /share/apps/NGS_pipeline/src/mapReads.pl -a 
/Bioinformatics/NGS_analyses/ad_hoc/Groups/core/hiseq_raw_data/140529_D00361_0050_AH9A9MADXX_5_29_14_JiKa_RRBS_JrWen_BC13/JrWen_BC13.config -m /Bioinformatics/NGS_analyses/ad_hoc/Groups/core/hiseq_raw_data/140529_D00361_0050_AH9A9MADXX_5_29_14_JiKa_RRBS_JrWen_BC13/InputMetaData.csv


/share/apps/perl/perl-5.18.1/bin/perl /Bioinformatics/Users/zfu/Source_Code/NGS_Pipeline/RNAseq/20140801/src/mapReads.pl -a /Bioinformatics/Users/zfu/Source_Code/NGS_Pipeline/RNAseq/20140801/input/JrWen_BC13.config -m /Bioinformatics/Users/zfu/Source_Code/NGS_Pipeline/RNAseq/20140801/input/InputMetaData.csv