7.2 Export Wiggle Files
MEDIPS allows to export genome wide coverage pro les as wiggle les for visualization in common genome browsers.
> MEDIPS.exportWIG(Set = hESCs_MeDIP[[1]], file = "hESC.MeDIP.rep1.wig",
+ format = "rpkm", descr = "")
❼ Set: a MEDIPS or COUPLING SET. In case of a COUPLING SET, the
format parameter must be set to pdensity because in this case a sequence
pattern (e.g. CpG) density pro le will be exported.
❼ file: the output le name
❼ format: can be either count or rpkm for a MEDIPS SET or pdensity for
a COUPLING SET.
❼ descr: a track description for the wiggle le