1908  svn co http://epitope3.liai.org/svn/bioinformatics/jgbaum/NGS_pipeline/trunk/ ./trunk
 1913  svn up
 1919  svn merge --reintegrate https://epitope3.liai.org/svn/bioinformatics/jgbaum/NGS_pipeline/branches/alex/
 1920  svn stat
 1921  svn commit
 1923  svn up

/share/apps/NGS_pipeline_dev/src/generateReport.pl -m /Bioinformatics/NGS_analyses/automated/RNA-Seq/Mapping/000880_BeSc_IKZF3_Details -q /Bioinformatics/NGS_analyses/automated/RNA-Seq/QC/000877_140829_D00361_0097_BHA0E7ADXX_GrSe10_ChIP41 -a /Bioinformatics/NGS_analyses/automated/RNA-Seq/Mapping/000880_BeSc_IKZF3_Details/analysis.config -t CHIP

/share/apps/NGS_pipeline_dev/src/generateReport.pl -m /Bioinformatics/NGS_analyses/automated/RNA-Seq/Mapping/000883_BeSc_IKZF3_D10_Details -q QC_LOCATION=/Bioinformatics/NGS_analyses/automated/RNA-Seq/QC/000861_8_19_14_GrSe02_verB_BAC -a /Bioinformatics/NGS_analyses/automated/RNA-Seq/Mapping/000883_BeSc_IKZF3_D10_Details/analysis.config -t CHIP

/share/apps/NGS_pipeline_dev/src/generateReport.pl -m /Bioinformatics/NGS_analyses/automated/RNA-Seq/Mapping/000931_StSt_BAC_708_506_Details -q /Bioinformatics/NGS_analyses/automated/RNA-Seq/QC/000861_8_19_14_GrSe02_verB_BAC -a /Bioinformatics/NGS_analyses/automated/RNA-Seq/Mapping//000931_StSt_BAC_708_506_Details/analysis.config -t Mapping

/share/apps/NGS_pipeline_dev/src/DEReads.pl -i /Bioinformatics/Groups/core/DESeq_Input/DESeq_Inputfile_PaMa_891.csv -t PaMa_891

/share/apps/NGS_pipeline_dev/src/DEReads.pl -i /Bioinformatics/Groups/core/DESeq_Input/DEseq_inputfile_SOTON03_11SEP14.csv -t SOTON03_11SEP14

/share/apps/NGS_pipeline_dev/src/DEReads.pl -i /Bioinformatics/Groups/core/DESeq_Input/DESeq_Inputfile_StSc01_11SEP14.csv -t StSc01_11SEP14

/share/apps/NGS_pipeline_dev/src/DEReads.pl -i /Bioinformatics/Groups/core/DESeq_Input/DeSeq_Inputfile_DaWeTEMRA_SCT_11SEP14.csv -t DaWeTEMRA_SCT_11SEP14

/share/apps/NGS_pipeline_dev/src/DEReads.pl -i /Bioinformatics/Groups/core/DESeq_Input/DESeq_Inputfile_IsEn_SCT_11SEP14.csv -t IsEn_SCT_11SEP14

/share/apps/NGS_pipeline_dev/src/generateReport.pl -m /Bioinformatics/NGS_analyses/automated/RNA-Seq/Mapping/000876_8_27_14_AnTS_RNAseq_Details/ -q /Bioinformatics/NGS_analyses/automated/RNA-Seq/QC/000875_08_27_14_AgTs_RNAseq/ -a /Bioinformatics/NGS_analyses/automated/RNA-Seq/Mapping/000876_8_27_14_AnTS_RNAseq_Details/analysis.config -t Mapping

/share/apps/NGS_pipeline_dev/src/generateReport.pl -m /Bioinformatics/NGS_analyses/automated/RNA-Seq/Mapping/000887_SLE_H3K27ac_W25_Redo_Details -q /Bioinformatics/NGS_analyses/automated/RNA-Seq/QC/000877_140829_D00361_0097_BHA0E7ADXX_GrSe10_ChIP41 -a /Bioinformatics/NGS_analyses/automated/RNA-Seq/Mapping/000887_SLE_H3K27ac_W25_Redo_Details/analysis.config -t CHIP

/share/apps/NGS_pipeline_dev/src/generateReport.pl -m /Bioinformatics/NGS_analyses/automated/RNA-Seq/Mapping/000854_JrWen_BC13_Details_TEST_WU -q /Bioinformatics/NGS_analyses/automated/RNA-Seq/QC/000769_140529_D00361_0050_AH9A9MADXX_5_29_14_JiKa_RRBS_JrWen_BC13 -a /Bioinformatics/NGS_analyses/automated/RNA-Seq/Mapping/000854_JrWen_BC13_Details_TEST_WU/analysis.config -t Mapping

/share/apps/NGS_pipeline_dev/src/DEReads.pl -i /Bioinformatics/Groups/core/DESeq_Input/DESeq_Inputfile_PaMa_891.csv -t PaMa_891

/share/apps/NGS_pipeline_dev/src/DEReads.pl -i /Bioinformatics/Groups/core/DESeq_Input/DEseq_inputfile_SOTON03_11SEP14.csv -t SOTON03_11SEP14

/share/apps/NGS_pipeline_dev/src/DEReads.pl -i /Bioinformatics/Groups/core/DESeq_Input/DESeq_Inputfile_StSc01_11SEP14.csv -t StSc01_11SEP14