Thursday, January 7, 2016

enhancer

cd /Bioinformatics/Users/zfu/2015_Bethany_SuperEnhancer/08.PeakCalling.TypicalOnly/W500D750E3L4
find . -type f -name "*.err" -exec rm {} \;
find . -type f -name "*.out" -exec rm {} \;
find . -type f -name "*.bw" -exec rm {} \;
find . -type f -name "*.bed" -exec rm {} \;
find . -type f -name "*.bedGraph" -exec rm {} \;
find . -type f -name "typicalPeaks.txt" -exec rm {} \;
find . -type f -name "*.sh" -exec sed -i "s/W200D750E3L4/W500D750E3L4/g" {} \;
find . -type f -name "*.sh" -exec sed -i "s/200/500/g" {} \;
find . -type f -name "*ChIPSeq.sh" -exec qsub {} \;


cd /Bioinformatics/Users/zfu/2015_Bethany_SuperEnhancer/08.PeakCalling.TypicalOnly/W750D750E3L4
find . -type f -name "*.err" -exec rm {} \;
find . -type f -name "*.out" -exec rm {} \;
find . -type f -name "*.bw" -exec rm {} \;
find . -type f -name "*.bed" -exec rm {} \;
find . -type f -name "*.bedGraph" -exec rm {} \;
find . -type f -name "typicalPeaks.txt" -exec rm {} \;
find . -type f -name "*.sh" -exec sed -i "s/W200D750E3L4/W750D750E3L4/g" {} \;
find . -type f -name "*.sh" -exec sed -i "s/200/750/g" {} \;
find . -type f -name "*ChIPSeq.sh" -exec qsub {} \;


cd /Bioinformatics/Users/zfu/2015_Bethany_SuperEnhancer/08.PeakCalling.TypicalOnly/W1000D750E3L4
find . -type f -name "*.err" -exec rm {} \;
find . -type f -name "*.out" -exec rm {} \;
find . -type f -name "*.bw" -exec rm {} \;
find . -type f -name "*.bed" -exec rm {} \;
find . -type f -name "*.bedGraph" -exec rm {} \;
find . -type f -name "typicalPeaks.txt" -exec rm {} \;
find . -type f -name "*.sh" -exec sed -i "s/W200D750E3L4/W1000D750E3L4/g" {} \;
find . -type f -name "*.sh" -exec sed -i "s/200/1000/g" {} \;
find . -type f -name "*ChIPSeq.sh" -exec qsub {} \;



cd /Bioinformatics/Users/zfu/2015_Bethany_SuperEnhancer/08.PeakCalling.TypicalOnly/W500D750E3L4
find . -type f -name "*_bw.sh" -exec qsub {} \;
cd /Bioinformatics/Users/zfu/2015_Bethany_SuperEnhancer/08.PeakCalling.TypicalOnly/W750D750E3L4
find . -type f -name "*_bw.sh" -exec qsub {} \;
cd /Bioinformatics/Users/zfu/2015_Bethany_SuperEnhancer/08.PeakCalling.TypicalOnly/W1000D750E3L4
find . -type f -name "*_bw.sh" -exec qsub {} \;




cd /Bioinformatics/Users/zfu/2015_Bethany_SuperEnhancer/08.PeakCalling.TypicalOnly/W500D750E3L4
find . -type f -name "reports.html" -exec sed -i "s/W200D750E3L4/W500D750E3L4/g" {} \;
find . -type f -name "typicalPeaks.txt" -exec sed -i "s/W200D750E3L4/W500D750E3L4/g" {} \;

cd /Bioinformatics/Users/zfu/2015_Bethany_SuperEnhancer/08.PeakCalling.TypicalOnly/W750D750E3L4
find . -type f -name "reports.html" -exec sed -i "s/W200D750E3L4/W750D750E3L4/g" {} \;
find . -type f -name "typicalPeaks.txt" -exec sed -i "s/W200D750E3L4/W750D750E3L4/g" {} \;


cd /Bioinformatics/Users/zfu/2015_Bethany_SuperEnhancer/08.PeakCalling.TypicalOnly/W1000D750E3L4
find . -type f -name "reports.html" -exec sed -i "s/W200D750E3L4/W1000D750E3L4/g" {} \;
find . -type f -name "typicalPeaks.txt" -exec sed -i "s/W200D750E3L4/W1000D750E3L4/g" {} \;





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