QC strep reads

/share/apps/FastQC/FastQC-0.11.2/fastqc --contaminants /share/apps/FastQC/FastQC-0.11.2/Configuration/contaminants_LJI.txt --casava -o /Bioinformatics/Users/zfu/2015_Nadine_Strep/ -t 2 /Bioinformatics/Users/zfu/2015_Nadine_Strep/URF918-2/02.Mapping/URF918-2.unaligned.fastq.gz &

/share/apps/FastQC/FastQC-0.11.2/fastqc --contaminants /share/apps/FastQC/FastQC-0.11.2/Configuration/contaminants_LJI.txt --casava -o /Bioinformatics/Users/zfu/2015_Nadine_Strep/ -t 2 /Bioinformatics/Users/zfu/2015_Nadine_Strep/URF918-2/02.Mapping/URF918-2.aligned.fastq &

/share/apps/FastQC/FastQC-0.11.2/fastqc --contaminants /share/apps/FastQC/FastQC-0.11.2/Configuration/contaminants_LJI.txt --casava -o /Bioinformatics/Users/zfu/2015_Nadine_Strep/ -t 2 /Bioinformatics/Users/zfu/2015_Nadine_Strep/URF918-1/02.Mapping/URF918-1.unaligned.fastq.gz &

/share/apps/FastQC/FastQC-0.11.2/fastqc --contaminants /share/apps/FastQC/FastQC-0.11.2/Configuration/contaminants_LJI.txt --casava -o /Bioinformatics/Users/zfu/2015_Nadine_Strep/ -t 2 /Bioinformatics/Users/zfu/2015_Nadine_Strep/URF918-1/02.Mapping/URF918-1.aligned.fastq &

/share/apps/FastQC/FastQC-0.11.2/fastqc --contaminants /share/apps/FastQC/FastQC-0.11.2/Configuration/contaminants_LJI.txt --casava -o /Bioinformatics/Users/zfu/2015_Nadine_Strep/ -t 2 /Bioinformatics/Users/zfu/2015_Nadine_Strep/9-2/02.Mapping/9-2.unaligned.fastq.gz &

/share/apps/FastQC/FastQC-0.11.2/fastqc --contaminants /share/apps/FastQC/FastQC-0.11.2/Configuration/contaminants_LJI.txt --casava -o /Bioinformatics/Users/zfu/2015_Nadine_Strep/ -t 2 /Bioinformatics/Users/zfu/2015_Nadine_Strep/9-2/02.Mapping/9-2.aligned.fastq &

/share/apps/FastQC/FastQC-0.11.2/fastqc --contaminants /share/apps/FastQC/FastQC-0.11.2/Configuration/contaminants_LJI.txt --casava -o /Bioinformatics/Users/zfu/2015_Nadine_Strep/ -t 2 /Bioinformatics/Users/zfu/2015_Nadine_Strep/9-1/02.Mapping/9-1.unaligned.fastq.gz &

/share/apps/FastQC/FastQC-0.11.2/fastqc --contaminants /share/apps/FastQC/FastQC-0.11.2/Configuration/contaminants_LJI.txt --casava -o /Bioinformatics/Users/zfu/2015_Nadine_Strep/ -t 2 /Bioinformatics/Users/zfu/2015_Nadine_Strep/9-1/02.Mapping/9-1.aligned.fastq &