Friday, April 18, 2014

2014-04-18

7.0.1

Class I + DRB1

Search for allele which has one read cover the entire exon for each exon (2, 3,4)

Class II

Search for allele has coverage on each base at exon 2 + exon 3

7.0.2

Exclude 10 bases from exon-intron boundary and find the minimum coverage

7.0.3

find the minimum coverage from the exon-intron boundary

Search for allele which has one read cover the entire exon for each exon (2, 3,4) , if its number < 2, then search alleles have coverage on each base at exon 2 + exon 3 + exon 4

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