2014-03-10

New mapping methods

HLA pipeline 5.0.3
HLA pipeline 5.0.4
HLA pipeline 5.0.5
HLA pipeline 5.0.6
HLA pipeline 5.0.7
HLA pipeline 5.0.8
HLA pipeline 5.0.9

Old mapping methods

HLA pipeline 5.0.10
HLA pipeline 5.0.11
HLA pipeline 5.0.12
HLA pipeline 5.0.13
HLA pipeline 5.0.14
HLA pipeline 5.0.15
HLA pipeline 5.0.16

delete all sam files: HLA pipeline 5.0.X
keep all sam files:  HLA pipeline 5.0.X.1


Pipeline 5.0

Class 1: 175bp alignment
Class 2: 200bp alignment